Input sequence

Protein name DNA-directed RNA polymerase II subunit RPB1
Organism Caenorhabditis elegans Length 1856
Disorder content 23.3% ProS content 10.8%
IDEAL NA UniProt P16356

Prediction

Order Disorder ProS BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP RPS-BLAST:SCOP HMMER:SCOP SEG:LCR 0 1856 1-4 5-155 156-174 175-201 202-206 207-260 261-266 267-325 326-345 346-604 605-609 610-1260 1261-1270 1271-1478 1479-1482 1483-1856 5-155 175-201 207-260 267-325 346-604 610-1260 1271-1478 1-4 156-174 326-345 605-609 1261-1270 1483-1856 156-174 326-345 605-609 1487-1491 1505-1553 1592-1617 1663-1670 1676-1680 1697-1701 1739-1742 1765-1772 1787-1800 1808-1813 1825-1829 1836-1856 5-1499 5-1503 890-1073 350-508 18-347 1158-1286 519-685 724-816 1073-1143 824-891 12-348 350-515 518-686 711-817 824-1420 9-1467 1507-1577 3-1472 154-172 246-259 761-772 1587-1605 1610-1774 1778-1815 1820-1852 3h0gA(2-1487) 0.0 54.37% 3h0gA(2-1489) 0.0 54.36% PF04992(1-185) 6e-55 54.59% PF00623(1-159) 5e-52 58.49% PF04997(5-326) 1e-46 38.51% PF04990(1-130) 5e-44 66.67% PF04983(2-144) 2e-25 39.29% PF05000(14-106) 8e-20 60.22% PF04998(142-212) 9e-19 63.38% PF04998(1-68) 3e-14 51.47% PF04997 1.8e-191 646.6% PF00623 1.1e-111 381.6% PF04983 5.3e-76 263.1% PF05000 8.2e-56 196.0% PF04998 4.5e-165 559.0% 1i3qA(7-1414) 0.0 50.58% 1wd3A1(5-75) 1e-05 11.27% e.29.1 0.0 1732.0%

Sequence

MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI
DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR
VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRY
QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPE
WMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD
VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV
ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGAR
VDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNL
SVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVR
MMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTH
STHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAA
NFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLE
PTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIA
CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREG
LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNM
PTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLL
RKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGN
DEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEM
VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGA
AAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSR
TSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDK
GEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGF
KSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISF
DGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEE
DPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAGSPSNRE
FSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDP
LGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYS
PTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPS
YSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSS
PQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPSSPTYDPNS

Region:1-1856
Length:1856aa
Label:Full sequence
Reset:click