Input sequence

Protein name Protocadherin-1
Organism Homo sapiens Length 1060
Disorder content 19.4% ProS content 14.2%
IDEAL NA UniProt Q08174

Prediction

Order Disorder ProS BLAST:PDB BLAST:PDB BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:PDB RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam RPS-BLAST:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam HMMER:Pfam RPS-BLAST:SCOP RPS-BLAST:SCOP RPS-BLAST:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP HMMER:SCOP SEG:LCR TMHMM:TMhelix 0 1060 1-54 55-445 446-451 452-837 838-851 852-874 875-919 920-926 927-934 935-944 945-945 946-952 953-967 968-1005 1006-1011 1012-1051 1052-1060 55-445 452-837 852-874 920-926 935-944 953-967 1006-1011 1052-1060 1-54 838-851 875-919 927-934 946-952 968-1005 1012-1051 1-9 33-54 848-851 875-900 912-919 927-934 946-952 968-983 991-1005 1012-1041 1047-1051 226-644 458-833 69-379 168-703 606-812 59-272 815-1025 513-603 173-271 620-706 291-377 733-808 62-138 58-142 173-271 285-378 400-497 511-603 617-706 728-813 815-1029 238-664 555-812 64-348 54-160 162-272 268-429 381-498 500-604 606-707 709-814 37-54 853-874 899-924 973-986 852-874 3q2vA(54-468) 2e-34 30.66% 3q2wA(60-457) 3e-30 28.15% 3ubhA(120-409) 1e-14 29.18% 1l3wA(2-529) 5e-72 23.15% 2wcpA(3-204) 7e-26 23.58% 2wcpA(15-206) 1e-24 25.11% PF08374(1-212) 1e-28 55.14% PF00028(3-92) 1e-12 52.75% PF00028(1-92) 4e-08 38.38% PF00028(4-92) 2e-07 43.82% PF00028(7-91) 3e-06 41.38% PF00028(12-87) 3e-06 42.11% PF08266(5-80) 5e-06 42.17% PF08266 5.3e-07 14.2% PF00028 5.1e-16 63.8% PF00028 1.1e-23 89.3% PF00028 1.3e-08 39.2% PF00028 7e-27 99.9% PF00028 4.7e-16 63.9% PF00028 4.1e-13 54.2% PF08374 2.6e-155 526.5% 1dnvA(16-412) 9e-57 7.16% 2nlzA1(201-449) 9e-26 5.64% 2nlzA1(267-527) 7e-23 8.91% b.1.6 5.1e-06 21.8% b.1.6 1.4e-23 82.4% b.1.6 6.3e-35 120.6% b.1.6 3.4e-19 67.4% b.1.6 7.2e-33 114.4% b.1.6 6.3e-26 90.5% b.1.6 2e-21 75.0%

Sequence

MDSGAGGRRCPEAALLILGPPRMEHLRHSPGPGGQRLLLPSMLLALLLLLAPSPGHATRV
VYKVPEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGL
RECQNQLPGDPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLAIPEN
TNIGSLFPIPLASDRDAGPNGVASYELQAGPEAQELFGLQVAEDQEEKQPQLIVMGNLDR
ERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVI
QVKANDSDQGANAEIEYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAK
DRGTNPKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVS
DRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVD
SGNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNKPGEVIAEITASDADSGSNAE
LVYSLEPEPAAKGLFTISPETGEIQVKTSLDREQRESYELKVVAADRGSPSLQGTATVLV
NVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENAQVQLSVEQDNGDFVI
QNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPYITAPSN
TSHKLLTPQTRLGETVSQVAAEDFDSGVNAELIYSIAGGNPYGLFQIGSHSGAITLEKEI
ERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAG
DPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPK
PSGKASKGNKSKGKKSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPP
GSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDY
SYRTNPPKYPSKQVGQPFQLSTPQPLPHPYHGAIWTEVWE

Region:1-1060
Length:1060aa
Label:Full sequence
Reset:click